DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and rbm39b

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001014392.1 Gene:rbm39b / 541556 ZFINID:ZDB-GENE-050327-97 Length:539 Species:Danio rerio


Alignment Length:163 Identity:59/163 - (36%)
Similarity:81/163 - (49%) Gaps:36/163 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 RGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSR-GGRSKSKSPVKSRSRSRSRSNKSRDV 268
            :|.|:|||  :...:..||:.:|.|||||.|..|.:|| |||.||    :.|.|||||..|    
Zfish    17 KGESKSSS--ANGHNEERSKKKRRSHSRSPSPGRRRSRSGGRKKS----RERRRSRSRERK---- 71

  Fly   269 SKSKSKSHSRTRSRSPKRERDSRSRSRSVS-------------------KRESRSRSRSKSIHRD 314
             .|:||...|:||||  ::|..|||.|...                   .:.||.||||||..:.
Zfish    72 -PSRSKERKRSRSRS--KDRGGRSRGRKSPFMGQKLNGGPGGKTGPQHFPKHSRKRSRSKSPFKK 133

  Fly   315 SRS---RDRSASAENKSRSRSRSRSASPKNGNA 344
            .:|   :|:|...::||..|....:.||:..:|
Zfish   134 EKSPFKKDKSPFKKDKSPVRQPIDNLSPEERDA 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774
RRM2_SRSF4_like 120..191 CDD:410012
rbm39bNP_001014392.1 SF-CC1 76..526 CDD:273721 28/93 (30%)
Blue background indicates that the domain is not in the aligned region.

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