Protein Alignment B52 and msi1a

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_001430346.1
• Gene: msi1a / 503755
• ZFINID: ZDB-GENE-050306-36
• Length: 347
• Species: Danio rerio
• Alignment Length: 229
• Identity: 47/229 - (20%)
• Similarity: 87/229 - (37%)
• Gaps: 72/229 - (31%)

  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAV----YEL 57
            ::::|||.:...:..|:.:|..:|..::.::        ..|:|||.:.|....|..:    :||
Zfish    23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKVLAQNRHEL 87

  Fly    58 NGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPL--RTEY 120
            :.|       .::|.....|                                 |..|.|  ||:
Zfish    88 DSK-------TIDPKVAFPR---------------------------------RAQPKLVTRTK- 111

  Fly   121 RLIVENLSSRVSWQDLKDYMRQAGEV-----TYADAHKQRRNEGVVEFASLSDMKTAIEKLDDT- 179
            ::.|..||...:.:|:|.|..|.|:|     .:.....:.|..|.|.|    :.:..:||:.:.
Zfish   112 KIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTF----ENEDVVEKVCEIH 172

  Fly   180 --ELNGRRIHLVEDRRGGRSG--GGGGSGRGRSR 209
              |:|.:   :||.::.....  ...|:.|||||
Zfish   173 FHEINNK---MVECKKAQPKEVMSPTGTARGRSR 203

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	16/80 (20%)
		RRM2_SRSF4_like	120..191	CDD:410012	18/78 (23%)
msi1a	NP_001430346.1	None