DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and srsf6b

DIOPT Version :9

Sequence 1:NP_001014619.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001008732.1 Gene:srsf6b / 494133 ZFINID:ZDB-GENE-041219-1 Length:355 Species:Danio rerio


Alignment Length:372 Identity:218/372 - (58%)
Similarity:254/372 - (68%) Gaps:59/372 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69
            |||:|.|.|.|||:|::|||.|||:..:..:|||||||||||.|||||||||||||||.||||:|
Zfish     3 RVYIGKLSYHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVIV 67

  Fly    70 EPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSS---RYGPPLRTEYRLIVENLSSRV 131
            |    .|||..|||  |.|||..||.|||.| ...:|||.|   :||||:||||||||||||||.
Zfish    68 E----HARGPRRDR--DGYGGGYGGFGGRSN-SGYSSRSRSGRDKYGPPVRTEYRLIVENLSSRC 125

  Fly   132 SWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGR 196
            |||||||:||||||||||||||:|.||||:||.|.|||:.|::|||.|::|||:|.||||:    
Zfish   126 SWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSHSDMRRALDKLDVTDINGRKIRLVEDK---- 186

  Fly   197 SGGGGGSGRGRSRSSSSRSRSRSRR--RSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSR 259
                   .|.|...|:|||||||||  ||||||||.|:|:|||||:||...|:|:|..|.|||||
Zfish   187 -------PRRRRSYSASRSRSRSRRRSRSRSRRSSRSQSRSRSRSRSRSKHSRSRSGRKYRSRSR 244

  Fly   260 SRSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRD----- 319
            | |.||...|.|| ||.||:|||:.|....|||||::.|:|:||||||.||..|.||||.     
Zfish   245 S-SRKSHSKSHSK-KSRSRSRSRTEKSRSRSRSRSKAKSERDSRSRSREKSTSRKSRSRSASPRE 307

  Fly   320 ----------------------------RSASAENKSRSRSRSRSAS 338
                                        |||| .::|:|||||||||
Zfish   308 NGDGERVKSTSRSPSPKENRHQLESPRKRSAS-RSRSKSRSRSRSAS 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_001014619.2 RRM1_SRSF4_like 5..74 CDD:240783 48/68 (71%)
RRM2_SRSF4_like 120..191 CDD:241044 54/70 (77%)
srsf6bNP_001008732.1 RRM1_SRSF6 3..72 CDD:241040 49/72 (68%)
RRM <3..>71 CDD:223796 48/71 (68%)
RRM <108..>187 CDD:223796 61/89 (69%)
RRM2_SRSF4_like 114..185 CDD:241044 54/70 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6288
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 359 1.000 Inparanoid score I2173
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1315388at2759
OrthoFinder 1 1.000 - - FOG0000217
OrthoInspector 1 1.000 - - otm26204
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23147
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1390
SonicParanoid 1 1.000 - - X517
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.960

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