Protein Alignment B52 and Rbm4b

DIOPT Version :9

• Sequence 1: NP_001014619.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_001007015.2
• Gene: Rbm4b / 474154
• RGDID: 1359343
• Length: 357
• Species: Rattus norvegicus
• Alignment Length: 364
• Identity: 81/364 - (22%)
• Similarity: 131/364 - (35%)
• Gaps: 80/364 - (21%)

  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69
            ::::|.||....|:::...|:.||:..:..|...||||..||...|:||:..|:..:|.|..:.|
  Rat     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67

  Fly    70 EPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQ 134
            |.:                             |||:..|:           :|.|.|:|...:.|
  Rat    68 EAS-----------------------------KNKSKAST-----------KLHVGNISPTCTNQ 92

  Fly   135 DLKDYMRQAGEV-------TYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDR 192
            :|:....:.|.|       .||..|.:|..:.|          .||..||:||..|:|:|:....
  Rat    93 ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAV----------EAIRGLDNTEFQGKRMHVQLST 147

  Fly   193 RGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRR-----SSHSRSKSRSRSKSRGGRSKS---- 248
            ...|:..|.|...|..|.......|:.....|:.|     ..::......|:....|..:|
  Rat   148 SRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMYYN 212

  Fly   249 ----KSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERD---SRSRSRSVSKRESRSRS 306
                ......|.|.||....:...:.|......:|.|..|:.:..   |...|.||...:
  Rat   213 DAYGALDYYKRYRVRSYEAVAAAAAASAYNYAEQTMSHLPQVQSSAVPSHLNSTSVDPYD----- 272

  Fly   307 RSKSIHRDSRSRDRSASAENKSRSRSRSRSASPKNGNAS 345
              :.:.::|.|...||:....:.|....|..||...||:
  Rat   273 --RHLLQNSGSAATSAAMAAAASSSYYGRDRSPLRRNAA 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_001014619.2	RRM1_SRSF4_like	5..74	CDD:240783	22/68 (32%)
		RRM2_SRSF4_like	120..191	CDD:241044	22/77 (29%)
Rbm4b	NP_001007015.2	RRM1_RBM4	2..68	CDD:241050	20/64 (31%)
		RRM2_RBM4	78..144	CDD:241051	22/86 (26%)
		ZnF_C2HC	161..176	CDD:197667	3/14 (21%)
		Interaction with TNPO3. /evidence=ECO:0000250	196..357		25/121 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910