DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and srsf9

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001004795.1 Gene:srsf9 / 448015 XenbaseID:XB-GENE-491310 Length:225 Species:Xenopus tropicalis


Alignment Length:99 Identity:19/99 - (19%)
Similarity:36/99 - (36%) Gaps:16/99 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 QNVW----NDVDDKVVEALGGLDDELLTEHVCNKSTITQ------LQQE----IILTTHNELRRS 118
            |..|    .|....:::....|.:|.  |.:.|....|:      :::|    |......||...
 Frog    97 QKFWQHRIKDYHSYMLQISKQLSEEY--ERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEAD 159

  Fly   119 LAFGKQRNKRGLMNGARNMYKLDWDCELASLAAN 152
            ||.|.|....|::......:..:.:.|.:..|::
 Frog   160 LASGDQSLPMGVLGAQSERFPSNLEVEASPQASS 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 2/9 (22%)
RRM2_SRSF4_like 120..191 CDD:410012 6/33 (18%)
srsf9NP_001004795.1 RRM_SF 17..90 CDD:473069
RRM2_SRSF9 110..191 CDD:410161 15/82 (18%)
Blue background indicates that the domain is not in the aligned region.

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