DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and srsf5b

DIOPT Version :9

Sequence 1:NP_001014619.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001002610.1 Gene:srsf5b / 436883 ZFINID:ZDB-GENE-040718-354 Length:285 Species:Danio rerio


Alignment Length:321 Identity:175/321 - (54%)
Similarity:207/321 - (64%) Gaps:42/321 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
            |.|.|:::|.|....||:|:|||||||||.|||.:|.|:|||||:|.|||:||||||:||||..|
Zfish     1 MSGCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCNE 65

  Fly    66 RVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEK-NKNSRSSSRYGPPLRTEYRLIVENLSS 129
            ||.:|.||...|           |||..|||||:..: .:.|:.|.|..||:|||.|||||||||
Zfish    66 RVTIEHARVRLR-----------GGRGRGGGGRFPARYGRGSQDSRRNPPPMRTENRLIVENLSS 119

  Fly   130 RVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRG 194
            |||||||||:||||||||:||||:...|||||||||.||:|.|:|||...|:|||:|.|||    
Zfish   120 RVSWQDLKDFMRQAGEVTFADAHRPNLNEGVVEFASHSDLKNALEKLSGKEINGRKIKLVE---- 180

  Fly   195 GRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSR 259
                               .||.:||.||||..||.|||:.||.|:|| .||:|.|| ||.:|||
Zfish   181 -------------------ASRKKSRSRSRSNSSSRSRSRGRSASRSR-SRSRSHSP-KSHNRSR 224

  Fly   260 SRSNKSRDVSKSKSKSHSRTRSRSPKRERD----SRSRSRSVSKRESRSRSRSKSIHRDSR 316
            ||| :|...|..:.|...|..|.||.....    |||||||.|:..|||||||:|...|||
Zfish   225 SRS-RSASASPVRPKEAPRPESASPPASAQHPPRSRSRSRSRSRSRSRSRSRSRSPSTDSR 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_001014619.2 RRM1_SRSF4_like 5..74 CDD:240783 44/68 (65%)
RRM2_SRSF4_like 120..191 CDD:241044 53/70 (76%)
srsf5bNP_001002610.1 RRM1_SRSF4_like 5..73 CDD:240783 43/67 (64%)
RRM2_SRSF4_like 110..180 CDD:241044 52/69 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1315388at2759
OrthoFinder 1 1.000 - - FOG0000217
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101955
Panther 1 1.100 - - O PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X517
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.820

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