DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and trv

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster


Alignment Length:106 Identity:28/106 - (26%)
Similarity:47/106 - (44%) Gaps:13/106 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 YGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAH 152
            :..|..|||    :..::|.....|.|||..::.:.|.:|||.:..|.|::.....||:  :|..
  Fly   284 HAARTEGGG----QDMEDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEI--SDCR 342

  Fly   153 KQR-------RNEGVVEFASLSDMKTAIEKLDDTELNGRRI 186
            ..|       :..|.|.|...|:.::||..::...|..|.|
  Fly   343 VVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSI 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774
RRM2_SRSF4_like 120..191 CDD:410012 19/74 (26%)
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 19/73 (26%)
RRM3_TIA1_like 416..489 CDD:409790
Blue background indicates that the domain is not in the aligned region.

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