DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment B52 and Rox8

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:231 Identity:50/231 - (21%)
Similarity:86/231 - (37%) Gaps:55/231 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI-----KNGYGFVEFEDYRDADDAVYELNGKELLGE 65
            :|||.|...|.|..|...|...|..:...|     .:.|.|:|:.:|:.|..|:..:|.:..|.:
  Fly     9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEK 73

  Fly    66 RVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSR 130
            .:.|..|  |:.| |:.:.|                              :.:.:.:.|.:||..
  Fly    74 EIKVNWA--TSPG-NQPKTD------------------------------ISSHHHIFVGDLSPE 105

  Fly   131 VSWQDLKDYMRQAGEVT----YADAHKQR-RNEGVVEFASLSDMKTAIEKLDDTELNGRRIHL-- 188
            :..:.|::.....||::    ..|.|..: :....|.|...::.:.||:.::...:..|.|..  
  Fly   106 IETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNW 170

  Fly   189 --------VEDRRGGRSGG--GGGSGRGRSRSSSSR 214
                    .|..:||..||  |||.|.|.....|.|
  Fly   171 STRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQR 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 20/72 (28%)
RRM2_SRSF4_like 120..191 CDD:410012 14/85 (16%)
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 19/70 (27%)
RRM2_TIA1_like 96..170 CDD:409789 14/73 (19%)
RRM_SF 221..292 CDD:473069
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.