Protein Alignment B52 and rump

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Alignment Length: 271
• Identity: 69/271 - (25%)
• Similarity: 106/271 - (39%)
• Gaps: 58/271 - (21%)

  Fly    80 NRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPL--------RTEYRLIVENLSSRVSWQDL 136
            :|::..||.|  ||..|.|:.:.:.|...:...|..:        |...|:.:.|:.....||||
  Fly    11 SREKERDRRG--RGARGSRFTDADGNGNGAGSQGGGVAARDRSRERRNCRVYISNIPYDYRWQDL 73

  Fly   137 KDYMRQ-AGEVTYA----DAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDR---- 192
            ||..|: .|.:.|.    |...:.|..|:|||....:::.|:||::..|:|||.:.:.||.
  Fly    74 KDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDHGEQR 138

  Fly   193 -----------------------RGGRSGGGGGSGRGRSRSSSSRSRSRSRR---RSRSRRSSHS 231
                                   .||.:|||||.||..   ...|.|..|||   |...|.:.:.
  Fly   139 DQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDH---MDDRDRGFSRRDDDRLSGRNNFNM 200

  Fly   232 RSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNK--------SRDVSKSKS--KSHSRTRSRSPKR 286
            .|...:.|.:......|.|.::|...|....||        ..|..|.|.  |...:.:|.....
  Fly   201 MSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSL 265

  Fly   287 ERDSRSRSRSV 297
            :::..||..:|
  Fly   266 DKEGNSRGFAV 276

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774
		RRM2_SRSF4_like	120..191	CDD:410012	24/75 (32%)
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	59/232 (25%)
		RRM1_hnRNPM_like	58..133	CDD:409819	24/74 (32%)
		RRM2_hnRNPM_like	234..307	CDD:409820	8/43 (19%)
		RRM_SF	565..629	CDD:473069