DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and rbm14b

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:XP_021333123.2 Gene:rbm14b / 402858 ZFINID:ZDB-GENE-040426-2455 Length:560 Species:Danio rerio


Alignment Length:180 Identity:44/180 - (24%)
Similarity:69/180 - (38%) Gaps:43/180 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69
            :::||.|.....:.:|...|:.||:.....:...:.||..:....|:.|:.||||:|..|..:||
Zfish     8 KLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFKGRNLVV 72

  Fly    70 EPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQ 134
            |.:||.                                       ||.:. ::.|.||||..:.:
Zfish    73 EESRGR---------------------------------------PLHST-KVFVGNLSSMCTTE 97

  Fly   135 DLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGR 184
            ||::..:..|:|...|..|   ....|...:..|...|||.|..|...||
Zfish    98 DLQELFQTFGKVLECDKVK---GYAFVHMENKEDALQAIEALHGTSFKGR 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 20/68 (29%)
RRM2_SRSF4_like 120..191 CDD:410012 20/65 (31%)
rbm14bXP_021333123.2 None

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