DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and rbm4b

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_989204.1 Gene:rbm4b / 394812 XenbaseID:XB-GENE-494431 Length:338 Species:Xenopus tropicalis


Alignment Length:363 Identity:81/363 - (22%)
Similarity:126/363 - (34%) Gaps:118/363 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69
            :::||.||....:.:|:..|:.:||..:..|...||||..||.:.||:||:.||..:|....:.|
 Frog     3 KLFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAADEAVHNLNHYKLHSVPINV 67

  Fly    70 EPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQ 134
            |.:||..:.|.                                        :|.|.|||:..:.:
 Frog    68 EHSRGKPKAST----------------------------------------KLHVSNLSTSCTSE 92

  Fly   135 DLKDYMRQAGEV-------TYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH----- 187
            :|:....:.|.|       .||..|.:|..|.:          .||:.||:||..|:|:|     
 Frog    93 ELRAKFEEYGAVLECDIVKDYAFVHMERSAEAL----------DAIKNLDNTEFKGKRMHVQLST 147

  Fly   188 --------LVEDRRGGRSGGGGGSGR--------------------------GRSRSSSSRSRS- 217
                    :.|..|..|.|..|...:                          |..||:::..|: 
 Frog   148 SRLRVTPGMGERTRCYRCGKEGHWSKECPLDQMTKELEQAPGYPPESFPDPYGPMRSAAAAYRTA 212

  Fly   218 ---------RSR-------RRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSR 266
                     |.|       :|.|.|.||:.....|..:    ....:.:.|..|.|..|...:..
 Frog   213 YAHRVFYDERERFSIVDYYQRYRVRPSSYDALIERRLT----ALPSAATTVSYRERIESFPYERH 273

  Fly   267 DV-SKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESR 303
            .: ...:..|....|.|||.|...|.|.|..:.:.|.|
 Frog   274 LLPPPPELPSSYYPRERSPLRRSSSASSSMEIYRTERR 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 24/68 (35%)
RRM2_SRSF4_like 120..191 CDD:410012 22/90 (24%)
rbm4bNP_989204.1 RRM_SF 2..68 CDD:473069 22/64 (34%)
RRM_SF 78..144 CDD:473069 22/115 (19%)
ZnF_C2HC 161..176 CDD:197667 4/14 (29%)
COG5222 <162..>201 CDD:227547 3/38 (8%)

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