Protein Alignment B52 and srsf3a

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_001002053.1
• Gene: srsf3a / 368925
• ZFINID: ZDB-GENE-030616-631
• Length: 174
• Species: Danio rerio
• Alignment Length: 266
• Identity: 77/266 - (28%)
• Similarity: 95/266 - (35%)
• Gaps: 116/266 - (43%)

  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKN---GYGFVEFEDYRDADDAVYELNGKELLGER 66
            :||||.|.....:.:|||.|..||..|.:.:..   |:.||||||.|||.|||.||:|:.|.|.|
Zfish    15 KVYVGNLGNSGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCR 79

  Fly    67 VVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRY-GPPLRTEYRLIVENLSSR 130
            |.||.:.|..|                                ||: |||
Zfish    80 VRVEMSNGEKR--------------------------------SRFRGPP--------------- 97

  Fly   131 VSW--QDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRR 193
            .||  :...||.|       .|.:::|.:.
Zfish    98 PSWSRRPRDDYRR-------GDDYRRRSSP----------------------------------- 120

  Fly   194 GGRSGGGGGSGRGRS-RSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSR 257
                     ..|.|| |.|.|||||||..|.|.|..|.||.::...|:|..|           ||
Zfish   121 ---------PARHRSPRRSFSRSRSRSLSRERRRERSLSRDRNYKPSRSFSG-----------SR 165

  Fly   258 SRSRSN 263
            ||||||
Zfish   166 SRSRSN 171

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	34/71 (48%)
		RRM2_SRSF4_like	120..191	CDD:410012	7/72 (10%)
srsf3a	NP_001002053.1	RRM_SRSF3	10..90	CDD:241089	35/74 (47%)