Protein Alignment B52 and tra2

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_476764.1
• Gene: tra2 / 36619
• FlyBaseID: FBgn0003742
• Length: 264
• Species: Drosophila melanogaster
• Alignment Length: 261
• Identity: 69/261 - (26%)
• Similarity: 99/261 - (37%)
• Gaps: 60/261 - (22%)

  Fly    65 ERVVVEPARGTARGSNRDRYDD-RYGGRRGGGGGRYNEKNKNSRSSSR---YGPPLRTEYR---- 121
            :|.....:.||....::||..| .|.|.|     |:...:...||.||   ..||....:|
  Fly    20 KRSASSSSAGTTSSGHKDRRSDYDYCGSR-----RHQRSSSRRRSRSRSSSESPPPEPRHRSGRS 79

  Fly   122 -------------------LIVENLSSRVSWQDLKDYMRQAGEV----TYADAHKQR-RNEGVVE 162
                               :.|..|::..|...:::...:.|.:    ...||..|| |....:.
  Fly    80 SRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIY 144

  Fly   163 FASLSDMKTAIEKLDDTELNGRRIHL---VEDRRGGRSGGG--GGSGRGRS-RSSSSRSRSRSRR 221
            |..|||.:.|.:.....|::||||.:   :..|....:.|.  |...||:: ||.|.|
  Fly   145 FEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFSPR------- 202

  Fly   222 RSRSRRSSHSRSKS-----RSRSKSRGGRSKSKSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTRS 281
              |.||..|.||.|     |.|...|..|....   ..||.||:|..::|..|:|:|....||.|
  Fly   203 --RGRRVYHDRSASPYDNYRDRYDYRNDRYDRN---LRRSPSRNRYTRNRSYSRSRSPQLRRTSS 262

  Fly   282 R 282
            |
  Fly   263 R 263

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	1/8 (13%)
		RRM2_SRSF4_like	120..191	CDD:410012	20/101 (20%)
tra2	NP_476764.1	RRM_TRA2	96..175	CDD:409798	19/78 (24%)