DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and Tial1

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001013211.1 Gene:Tial1 / 361655 RGDID:1595845 Length:392 Species:Rattus norvegicus


Alignment Length:209 Identity:45/209 - (21%)
Similarity:79/209 - (37%) Gaps:62/209 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI-----------------------KNGYGFVEFEDY 47
            :|||.|...|.|..:.:.|...|..:...:                       .:.|.||||.::
  Rat    11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEH 75

  Fly    48 RDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRY 112
            |||..|:..:||:::||:.|.|..|  |...|.:                         :.:|.:
  Rat    76 RDAAAALAAMNGRKILGKEVKVNWA--TTPSSQK-------------------------KDTSNH 113

  Fly   113 GPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHK-----QRRNEGVVEFASLSDMKTA 172
                   :.:.|.:||..::.:|:|......|:::.|...|     :.:..|.|.|.:..|.:.|
  Rat   114 -------FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171

  Fly   173 IEKLDDTELNGRRI 186
            |..:....|.||:|
  Rat   172 IVHMGGQWLGGRQI 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 24/90 (27%)
RRM2_SRSF4_like 120..191 CDD:410012 18/72 (25%)
Tial1NP_001013211.1 RRM1_TIAR 10..107 CDD:410028 26/97 (27%)
RRM2_TIAR 113..192 CDD:410029 18/80 (23%)
RRM3_TIAR 222..294 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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