DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and si:ch1073-335m2.2

DIOPT Version :9

Sequence 1:NP_001014619.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:XP_005170404.1 Gene:si:ch1073-335m2.2 / 322667 ZFINID:ZDB-GENE-081104-82 Length:3139 Species:Danio rerio


Alignment Length:400 Identity:94/400 - (23%)
Similarity:142/400 - (35%) Gaps:111/400 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYG-------FVEFEDYRDADDAVYELNGKELL 63
            ::||.||..|||..:...||.:||...:.:....|       ||:|.|.:.|..|...:|     
Zfish     8 LWVGNLPEHVREEKIVEHFKRFGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQKAHNAVN----- 67

  Fly    64 GERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNK------------NSRSSSR----- 111
                         :..:||...|            |||...            .|.|.:|     
Zfish    68 -------------KMGDRDLRTD------------YNEPGSVPSAVRGLEDATPSSSHTREVAGF 107

  Fly   112 --------YGPPL-------RTEYRLIVENLSSRVSWQDLKDYMRQAGEVTY-------ADAHKQ 154
                    ||||:       |.|.||...:..||....|...|.......::       |:.::.
Zfish   108 SRATVGPVYGPPVSLHTREGRYERRLDGSSSDSRERAYDHSPYGHHERSASFDRPRHYNAEYYRD 172

  Fly   155 RR--NEGVVEFASLSDMKTAIE--------KLDDT---ELNGRRIHLVEDRRGGRSGGGGGSGRG 206
            |.  ..||....:.|.:.:..:        ::.|:   ..:.||....:||           ||.
Zfish   173 RSLFASGVSSSPAASTISSGFDAPEAHFESRIRDSFTLSSSARRDPYRDDR-----------GRR 226

  Fly   207 RSRSSSSRSRSRSRRRSRSRRSSHSRSKSR----SRSKSRGGRSKSKSPVKSRSRSRSRSNKSRD 267
            ..|:.....||||...|:||..|..||..:    :.|..|...|.|:.|   .|||||:|:.|..
Zfish   227 ADRTYHHHRRSRSSHSSQSRHPSPQRSTGQTPKAAHSPKRSALSPSRGP---PSRSRSQSSSSDS 288

  Fly   268 VSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAENKSRSRS 332
            ||.:.|.....:.|.|...|   .||:|||....:.:...:.::..|:....||.....::.. :
Zfish   289 VSSTSSTGSGSSDSNSSSSE---GSRARSVQSTATHAPPANTALTLDNDEPRRSFGIRVQNLP-T 349

  Fly   333 RSRSASPKNG 342
            ||...|.|:|
Zfish   350 RSTDTSLKDG 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_001014619.2 RRM1_SRSF4_like 5..74 CDD:240783 19/74 (26%)
RRM2_SRSF4_like 120..191 CDD:241044 14/90 (16%)
si:ch1073-335m2.2XP_005170404.1 RRM1_SHARP 7..81 CDD:240794 24/102 (24%)
RRM2_SHARP 341..414 CDD:240795 4/19 (21%)
RRM3_SHARP 441..514 CDD:240796
RRM4_SHARP 515..591 CDD:240797
Ehrlichia_rpt 1520..2098 CDD:118064
SPOC 2984..3105 CDD:285043
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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