DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and rbmx

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_997763.1 Gene:rbmx / 321860 ZFINID:ZDB-GENE-030131-579 Length:379 Species:Danio rerio


Alignment Length:407 Identity:93/407 - (22%)
Similarity:131/407 - (32%) Gaps:168/407 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYELNGKE 61
            ::::|||.....|:.||.:|..:||..::|:        ..|:.||.:|:..||.||..|:|||.
Zfish     9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREMNGKP 73

  Fly    62 LLGERVVVEPA------------------RGTARGSNRDRYDDRYGGRRGGGGGRYN-------- 100
            |.|:.:.||.|                  ||.:||..         |.|||..|...        
Zfish    74 LDGKPIKVEQATKPQFETSGRRGPPPPRSRGPSRGLR---------GSRGGPSGMRGPPSREPFF 129

  Fly   101 ----------------EKN---------------KNSRSSSRYGPPLRTEYRL------------ 122
                            |:|               :.||....||||.|.:..:            
Zfish   130 KGMSSRGPPPMKRGPPERNGGPPPKRSAPSGPMGRPSRDRDPYGPPPRRDSLMSRRDDGPPHRDD 194

  Fly   123 ---IVENLSSR--VSWQDLKDYMRQAGEVTYAD--AHKQRRNEGVVEFASLSDMKTAIEKLDDTE 180
               ..::.|||  :|.:|.:||.....:..|.:  .|...|:    ::.|.|             
Zfish   195 HYGSKDSYSSRDYMSSRDSRDYGPPPRDYPYREYSGHSSSRD----DYGSGS------------- 242

  Fly   181 LNGRRIHLVEDRRG--GRSGGGGG-------------------SGRGRSRS-----------SSS 213
                        ||  .|.|.|||                   .|.|.|||           |.|
Zfish   243 ------------RGYSDRDGYGGGREPRGYIDRPSAGSYRDPYDGYGNSRSAPPSRGPPPSYSGS 295

  Fly   214 RSRSR------SRRRSRSRRSSHSRSKSRSRSKSRG---GRSKSKSPVKSRSRSRSRSNKSRDVS 269
            ...||      |.|.....|.|:..|:|...|.:||   ||.:...|...|...|..|:.||...
Zfish   296 GGSSRYDDYGSSSRDGYGSRDSYPSSRSDPYSTNRGDRPGRQERGPPPLERGYPREYSSSSRGAP 360

  Fly   270 KSKSKSHSRTRSRSPKR 286
            :...:.     .|.|.|
Zfish   361 RGGGRG-----GRRPDR 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 27/94 (29%)
RRM2_SRSF4_like 120..191 CDD:410012 12/89 (13%)
rbmxNP_997763.1 RRM_RBMX_like 7..86 CDD:409816 27/76 (36%)
PABP-1234 <10..204 CDD:130689 45/202 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..379 80/359 (22%)

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