DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and Rbm28

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001402807.1 Gene:Rbm28 / 312182 RGDID:1311336 Length:753 Species:Rattus norvegicus


Alignment Length:340 Identity:69/340 - (20%)
Similarity:119/340 - (35%) Gaps:58/340 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIK--------NGYGFVEFEDYRDADDAVYEL 57
            |.|..::||.||...|...||..|...|..:...:.        .|:|:|.|....|...|:.|:
  Rat     1 MAGLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65

  Fly    58 NGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY-- 120
            ...|  |.::.|..|:...:..:::                 ..||:||.|..:.....:.:.  
  Rat    66 TTFE--GCKINVTIAKKKLKNKSKE-----------------TRKNENSESPKKEPKHKKAKVAD 111

  Fly   121 ---RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEG------VVEFASLSDMKTAIEKL 176
               |||:.|||.:.|..|||......|  |..:.:..|:.:|      .::|.:|.:...|::..
  Rat   112 KKARLIIRNLSFKCSEDDLKSVFTHYG--TVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGA 174

  Fly   177 DDTELNGRRIHL--------VEDRRGGRSGGGGGSGRGRSRSSSSRS-RSRSRRRSRSRRSSHSR 232
            :..|:.||.:.:        .:|.:.....||..|...:.:.||.:| |...:............
  Rat   175 NMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKKSSERKPKESSKKSCRVEEQVEDDDDDGEDEE 239

  Fly   233 SKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSRDVSKSK---------SKSHSRTRSRSPKRER 288
            .......:.....|...|||..|.|:..|:.......:..         |.|:....:.|.....
  Rat   240 DDDTQDDEDESRDSTVASPVSVRKRAVKRAAPEESTEEDTYDDSDLEEGSSSYGDGTAHSESSTE 304

  Fly   289 DSRSRSRSVSKRESR 303
            :.......|||::.|
  Rat   305 ELEDEDVPVSKKKKR 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 20/76 (26%)
RRM2_SRSF4_like 120..191 CDD:410012 20/89 (22%)
Rbm28NP_001402807.1 RRM1_RBM28_like 5..78 CDD:409847 19/74 (26%)
RRM2_RBM28_like 115..190 CDD:409848 20/76 (26%)
PABP-1234 322..709 CDD:130689
RRM3_RBM28_like 329..411 CDD:409849
RRM4_RBM28_like 481..575 CDD:409850
Blue background indicates that the domain is not in the aligned region.

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