Protein Alignment B52 and Rbmx

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_001020834.1
• Gene: Rbmx / 302855
• RGDID: 1565256
• Length: 390
• Species: Rattus norvegicus
• Alignment Length: 432
• Identity: 110/432 - (25%)
• Similarity: 139/432 - (32%)
• Gaps: 169/432 - (39%)

  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYELNGKE 61
            ::::|||.....|:.||..|..|||..::|:        ..|:.||.||...||.||..::|||.
  Rat     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKS 73

  Fly    62 LLGERVVVEPA---------RG-----TARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSR----- 107
            |.|:.:.||.|         ||     .:||..|        |.|||.||....:...||
  Rat    74 LDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPR--------GLRGGRGGSGGTRGPPSRGGHMD 130

  Fly   108 ----------SSSR---------------------------------------------YGPPLR 117
                      ||||                                             ||.|.|
  Rat   131 DGGYSMNFTLSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDGYGGPPR 195

  Fly   118 TE----------------YRLIVENLSSR--VSWQDLKDYMRQAGEVTYAD-AHKQRRNEGVVEF 163
            .|                |. ..::.|||  .|.:|.:||.....:.||.| .|...|
  Rat   196 REPLPSRRDVYLSPRDDGYS-TKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSR------- 252

  Fly   164 ASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRS-RSRR 227
                         ||....|     ..||          .|.||.|..|......|.|.| .|..
  Rat   253 -------------DDYPSRG-----YSDR----------DGYGRERDYSDHPSGGSYRDSYESYG 289

  Fly   228 SSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSRD-VSKSKSKSHSRTRSRSPKRE---- 287
            :|.|...:|....|.||.|:    ....|.||.....||| .:.|:|..:|..|.|..::|
  Rat   290 NSRSAPPTRGPPPSYGGSSR----YDDYSSSRDGYGGSRDSYTSSRSDLYSSGRDRVGRQERGLP 350

  Fly   288 ----------RDS-RSRSRSVSKRESRSRSRSKSIHRDSRSR 318
                      ||| .|.||...:...|..|||   .|..|||
  Rat   351 PSMERGYPPPRDSYSSSSRGAPRGGGRGGSRS---DRGGRSR 389

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	28/85 (33%)
		RRM2_SRSF4_like	120..191	CDD:410012	16/73 (22%)
Rbmx	NP_001020834.1	RRM_RBMX_like	7..86	CDD:409816	28/76 (37%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	58..390		94/383 (25%)
		dnaA	165..>302	CDD:455861	35/172 (20%)
		RBM1CTR	173..217	CDD:400429	6/44 (14%)