DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and Snrnp70

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_033250.3 Gene:Snrnp70 / 20637 MGIID:98341 Length:448 Species:Mus musculus


Alignment Length:409 Identity:93/409 - (22%)
Similarity:128/409 - (31%) Gaps:157/409 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYELNGKEL 62
            ::|..:.|...|..|.|.|:.||..:.|.:        ..||.|:|:|..||...|....:||::
Mouse   105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169

  Fly    63 LGERVVVEPARG-TARGSNRDRYDDRYGGRRGGGGG---RYNEKNKNSRSSSRYGP-PLRTEYRL 122
            .|.||:|:..|| |.:|....|.....||.|.||..   |::.::..||...|.|| ||      
Mouse   170 DGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPL------ 228

  Fly   123 IVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH 187
                                        .|:.                                 
Mouse   229 ----------------------------PHRD--------------------------------- 232

  Fly   188 LVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPV 252
                             |.|.|....|.|||.|.:.|.||      :||||.:.|..||:.|.  
Mouse   233 -----------------RDRDRERERRERSRERDKERERR------RSRSRDRRRRSRSRDKD-- 272

  Fly   253 KSRSRSRSRS-NKSRDVSKSKSKSHSRTRSRSPKRER---------------------------- 288
             .|.|||.|| :|.||..:..|:|..|.|....::|.                            
Mouse   273 -ERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGGGSGGGGGGDMAEPSEAGD 336

  Fly   289 -------------------DSRSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAENKSRSRSRS 334
                               :.:.|.|.   ||.|...||:...|..|.|||....:...|...|.
Mouse   337 GAPDDGPPGELGPEGPDGPEEKGRDRD---RERRRSHRSERERRRDRDRDRDREHKRGERGSERG 398

  Fly   335 RSASPKNGNASPDRNNESM 353
            |..:...|.:..|...|.:
Mouse   399 RDEARGGGGSGQDNGLEGL 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 23/75 (31%)
RRM2_SRSF4_like 120..191 CDD:410012 1/70 (1%)
Snrnp70NP_033250.3 U1snRNP70_N 3..94 CDD:432406
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..79
Required for interaction with U1 RNA. /evidence=ECO:0000250|UniProtKB:P08621 92..202 31/96 (32%)
RRM_snRNP70 102..187 CDD:409682 26/81 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..439 66/327 (20%)
Blue background indicates that the domain is not in the aligned region.

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