DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and Rbm4

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_033058.2 Gene:Rbm4 / 19653 MGIID:1100865 Length:361 Species:Mus musculus


Alignment Length:230 Identity:57/230 - (24%)
Similarity:89/230 - (38%) Gaps:57/230 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69
            ::::|.||....|:::...|:.||:..:..|...||||..||...|:||:..|:..:|.|..:.|
Mouse     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67

  Fly    70 EPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQ 134
            |.:                             |||:..|:           :|.|.|:|...:.|
Mouse    68 EAS-----------------------------KNKSKAST-----------KLHVGNISPTCTNQ 92

  Fly   135 DLKDYMRQAGEV-------TYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDR 192
            :|:....:.|.|       .||..|.:|..:.|          .||..||:||..|:|:|:....
Mouse    93 ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAV----------EAIRGLDNTEFQGKRMHVQLST 147

  Fly   193 RGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRR 227
            ...|:..|.|...|..|.......|:.....||.|
Mouse   148 SRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGR 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 22/68 (32%)
RRM2_SRSF4_like 120..191 CDD:410012 22/77 (29%)
Rbm4NP_033058.2 RRM1_RBM4 2..68 CDD:410018 20/64 (31%)
RRM2_RBM4 78..144 CDD:410019 22/86 (26%)
PTZ00368 <145..>181 CDD:173561 7/35 (20%)
ZnF_C2HC 161..176 CDD:197667 3/14 (21%)
Interaction with TNPO3. /evidence=ECO:0000250 196..361
Blue background indicates that the domain is not in the aligned region.

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