Protein Alignment B52 and rnp-9

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_001359585.1
• Gene: rnp-9 / 182350
• WormBaseID: WBGene00007396
• Length: 312
• Species: Caenorhabditis elegans
• Alignment Length: 190
• Identity: 41/190 - (21%)
• Similarity: 78/190 - (41%)
• Gaps: 33/190 - (17%)

  Fly     6 VYVGGLPYGVRERDLERFFKGYGRT------RDILIK--NGYGFVEFEDYRDADDAVYELNGKEL 62
            |:||.|...|....|:..|..:|..      ||:..:  .|||||.|.:.::|::|:..:||| .
 Worm    89 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGK-W 152

  Fly    63 LGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSR-YGPPLRTEYRLIVEN 126
            :|:|.|                      |......:.:|:|::..:..: :.........:.|.|
 Worm   153 IGKRAV----------------------RTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGN 195

  Fly   127 LSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRI 186
            :|.:.:..||:|.....|::......|.:| ...|.:........||.:::..|:.|.::
 Worm   196 ISQQTTDADLRDLFSTYGDIAEVRIFKTQR-YAFVRYEKKECATKAIMEMNGKEMAGNQV 254

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	24/75 (32%)
		RRM2_SRSF4_like	120..191	CDD:410012	14/67 (21%)
rnp-9	NP_001359585.1	RRM2_TIA1_like	88..162	CDD:409789	25/95 (26%)
		RRM_SF	189..259	CDD:473069	14/67 (21%)