DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and rnp-9

DIOPT Version :9

Sequence 1:NP_001014619.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001359585.1 Gene:rnp-9 / 182350 WormBaseID:WBGene00007396 Length:312 Species:Caenorhabditis elegans


Alignment Length:190 Identity:41/190 - (21%)
Similarity:78/190 - (41%) Gaps:33/190 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRT------RDILIK--NGYGFVEFEDYRDADDAVYELNGKEL 62
            |:||.|...|....|:..|..:|..      ||:..:  .|||||.|.:.::|::|:..:||| .
 Worm    89 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGK-W 152

  Fly    63 LGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSR-YGPPLRTEYRLIVEN 126
            :|:|.|                      |......:.:|:|::..:..: :.........:.|.|
 Worm   153 IGKRAV----------------------RTNW
AARKNSEENRDKLTFEQVFNSTKADNTSVYVGN 195

  Fly   127 LSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRI 186
            :|.:.:..||:|.....|::......|.:| ...|.:........||.:::..|:.|.::
 Worm   196 ISQQTTDADLRDLFSTYGDIAEVRIFKTQR-YAFVRYEKKECATKAIMEMNGKEMAGNQV 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_001014619.2 RRM1_SRSF4_like 5..74 CDD:240783 24/75 (32%)
RRM2_SRSF4_like 120..191 CDD:241044 14/67 (21%)
rnp-9NP_001359585.1 RRM2_TIA1_like 88..162 CDD:240799 25/95 (26%)
RRM3_TIA1_like 189..260 CDD:240800 14/67 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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