Protein Alignment B52 and rsp-6

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_741446.1
• Gene: rsp-6 / 177566
• WormBaseID: WBGene00004703
• Length: 179
• Species: Caenorhabditis elegans
• Alignment Length: 298
• Identity: 92/298 - (30%)
• Similarity: 114/298 - (38%)
• Gaps: 126/298 - (42%)

  Fly     4 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKN---GYGFVEFEDYRDADDAVYELNGKELLGE 65
            ::|||||||.....::||..|..:||.|.:.:..   |:.|||::|.|||:|||..|:|..:.|.
 Worm     3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGV 67

  Fly    66 RVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSR 130
            |..||.:.|.               ||||||
 Worm    68 RARVELSTGQ---------------RRGGGG---------------------------------- 83

  Fly   131 VSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGG 195
                                                                          |||
 Worm    84 --------------------------------------------------------------RGG 86

  Fly   196 RSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRS 260
            ..||.||.||.||.....|.|||||.|.|.|..|..||:.|||.:|| .||:.:|..:.|:||||
 Worm    87 GFGGRGGGGRDRSPYRGDRGRSRSRSRDRGRDRSRDRSRDRSRDRSR-DRSRERSRERERTRSRS 150

  Fly   261 RSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSVS 298
            ||.:.||.|.|||:|.||           |||||||.|
 Worm   151 RSPQERDRSHSKSRSRSR-----------SRSRSRSAS 177

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	30/71 (42%)
		RRM2_SRSF4_like	120..191	CDD:410012	0/70 (0%)
rsp-6	NP_741446.1	RRM_SRSF3_like	4..75	CDD:409808	30/70 (43%)