Protein Alignment B52 and sqd-1

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 238
• Identity: 54/238 - (22%)
• Similarity: 80/238 - (33%)
• Gaps: 86/238 - (36%)

  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIK--------NGYGFVEFEDYRDADDAVYELNGKE 61
            :::|||:...|...||...|..||......:|        .|:.||||   ...:.....|..:|
 Worm    30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF---TTGEGCKLALAARE 91

  Fly    62 --LLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIV 124
              :.|:.|.|:||:                          :.:||                ::.|
 Worm    92 QTIKGKSVEVKPAK--------------------------SRENK----------------KVFV 114

  Fly   125 ENLSSRVSWQDLKDYMRQAGEV-----TYADAHKQRRNEGVVEF--------ASLS--------- 167
            ..|.|..|.|||:.:..|.|:|     .:....|.|||...:.|        ||..
 Worm   115 GGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRE 179

  Fly   168 -DMKTAIEKLDDTELNGRRIHLVEDRR-GGRSGGGGGSGRGRS 208
             |:|.|:.:       |:|....:.|. |||...||..|...|
 Worm   180 CDVKKAVPQ-------GKRFPGAQGRMPGGRGMYGGRGGNNNS 215

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	22/78 (28%)
		RRM2_SRSF4_like	120..191	CDD:410012	22/93 (24%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	20/76 (26%)
		RRM_SF	111..185	CDD:473069	19/73 (26%)