Protein Alignment B52 and rsp-1

DIOPT Version :9

• Sequence 1: NP_001014619.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_496442.1
• Gene: rsp-1 / 174748
• WormBaseID: WBGene00004698
• Length: 312
• Species: Caenorhabditis elegans
• Alignment Length: 320
• Identity: 167/320 - (52%)
• Similarity: 214/320 - (66%)
• Gaps: 32/320 - (10%)

  Fly     2 VGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGER 66
            :.:|:|:|.|...|.|:|:|.||:|||:.||:|:|||:|||||:|.|||:|||::||||||.|||
 Worm     1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGER 65

  Fly    67 VVVEPARGTARGSNRDRYDDRYGGR--------RGGGGG---RYNEKNKN-SRSSSRYGPPLRTE 119
            |:::.::  .||...||.....|||        .|||||   |::..::. .|..||||.|..|.
 Worm    66 VILDYSK--PRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESRYGRPYSTR 128

  Fly   120 YRLIVENLSSRVSWQDLKDYMRQAG-EVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNG 183
            :|::|||||||:|||||||.:|:.| |.|||:||| |.||.::.||:.||:|..|||.|..:|||
 Worm   129 HRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHK-RPNEALLCFATPSDLKRCIEKCDGMDLNG 192

  Fly   184 RRIHLVEDRRGGRSGGGGGSGRGRSRSSS-SRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSK 247
            |:|.:::|.:.|||         ||||:| ||||||||.|.|||..|.|||||||||..:..|.:
 Worm   193 RKIKMIDDSQAGRS---------RSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRE 248

  Fly   248 SKSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTR-SRSPKRERDSRSRSRSVSKRESRSRS 306
            |||  ||||||||||..:|   ||:|.|.|..: .|||...|.|||.|...|.|.|||.|
 Worm   249 SKS--KSRSRSRSRSADNR---KSRSPSRSPKKVDRSPSPPRGSRSPSEKGSPRRSRSAS 303

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_001014619.2	RRM1_SRSF4_like	5..74	CDD:240783	41/68 (60%)
		RRM2_SRSF4_like	120..191	CDD:241044	41/71 (58%)
rsp-1	NP_496442.1	RRM	<3..180	CDD:223796	92/179 (51%)
		RRM1_SRSF4_like	4..73	CDD:240783	41/70 (59%)
		RRM2_SRSF4_like	129..200	CDD:241044	41/71 (58%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160166775
Domainoid	1	1.000	91	1.000	Domainoid score	I4861
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	268	1.000	Inparanoid score	I1856
Isobase	1	0.950	-	0	Normalized mean entropy	S1097
OMA	1	1.010	-	-		QHG45999
OrthoDB	1	1.010	-	-		D1315388at2759
OrthoFinder	1	1.000	-	-		FOG0000217
OrthoInspector	1	1.000	-	-		otm14269
orthoMCL	1	0.900	-	-		OOG6_101955
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1390
SonicParanoid	1	1.000	-	-		X517
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	13	12.790