Protein Alignment B52 and rsp-5

DIOPT Version :9

• Sequence 1: NP_001014619.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_495307.3
• Gene: rsp-5 / 174073
• WormBaseID: WBGene00004702
• Length: 208
• Species: Caenorhabditis elegans
• Alignment Length: 342
• Identity: 113/342 - (33%)
• Similarity: 146/342 - (42%)
• Gaps: 141/342 - (41%)

  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE--RV 67
            |:|:|.:||..||||:|||.||||:..:|.:|.|:.||:|||.|||:||.::|:||.:.|.  |:
 Worm     3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67

  Fly    68 VVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVS 132
            |||.|||..||      :||:|.|
 Worm    68 VVEMARGKPRG------NDRHGSR----------------------------------------- 85

  Fly   133 WQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRS 197
                                                                             
 Worm    86 ----------------------------------------------------------------- 85

  Fly   198 GGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVK-SRSRSRSR 261
                 |.|.||||...|||:..|||||||....|| :|||||.||     |:|||: ||.||.||
 Worm    86 -----SPRRRSRSPRRRSRTPPRRRSRSRDRKRSR-RSRSRSSSR-----SRSPVRESRRRSESR 139

  Fly   262 S-NKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAE 325
            | :..||:.:..|      |||||...:| |||:||.|..:: ...|.:|:     ||.||.|.:
 Worm   140 SPSPKRDLKREAS------RSRSPLPAKD-RSRTRSGSPPKN-GGDRKRSV-----SRGRSHSRD 191

  Fly   326 NKSRSRSRSRS-ASPKN 341
            ..:||.|||.| .|||:
 Worm   192 GSNRSVSRSPSPGSPKD 208

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_001014619.2	RRM1_SRSF4_like	5..74	CDD:240783	38/70 (54%)
		RRM2_SRSF4_like	120..191	CDD:241044	0/70 (0%)
rsp-5	NP_495307.3	RRM	<3..>77	CDD:223796	40/73 (55%)
		RRM_SF	3..74	CDD:302621	38/70 (54%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S1097
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1315388at2759
OrthoFinder	1	1.000	-	-		FOG0000217
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23147
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	5	4.970