DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment B52 and rbm-3.1

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_493022.1 Gene:rbm-3.1 / 173070 WormBaseID:WBGene00011155 Length:83 Species:Caenorhabditis elegans


Alignment Length:75 Identity:24/75 - (32%)
Similarity:35/75 - (46%) Gaps:8/75 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYELNGKEL 62
            ||||..|:...|.:|..||...|:..::.|        ..|:.|:||.:...|..||.::||.|.
 Worm     7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEF 71

  Fly    63 LGERVVVEPA 72
            .|..:.|..|
 Worm    72 NGRPLRVNLA 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 24/75 (32%)
RRM2_SRSF4_like 120..191 CDD:410012
rbm-3.1NP_493022.1 RRM 6..82 CDD:440488 24/75 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.