DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and rump

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:XP_551368.5 Gene:rump / 1281715 VectorBaseID:AGAMI1_000127 Length:603 Species:Anopheles gambiae


Alignment Length:169 Identity:51/169 - (30%)
Similarity:74/169 - (43%) Gaps:48/169 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 SNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKD-YMRQ 142
            :||||  .|...||.|.|.|::  |...||..|.....|   |:.|.|:.....|||||| :.::
Mosquito     8 NNRDR--SRRADRRSGAGSRFS--NDRDRSRDRERSDCR---RIYVSNVPYEYRWQDLKDLFRKE 65

  Fly   143 AGEVTYA----DAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVED------------ 191
            .|:|::.    |.:.:.|..|:|||.....::.|:||::..::|||.:.:.||            
Mosquito    66 VGDVSFVELFHDENNKPRGCGIVEFEKPEHVQMALEKMNRYDINGRNLVIKEDYGNERDKYGRVV 130

  Fly   192 ------------RR------------GGRSGGGGGSGRG 206
                        ||            ||..|||||.|.|
Mosquito   131 PKSFRGNDNDNRRRDRDDDRMSGPSHGGSGGGGGGGGGG 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774
RRM2_SRSF4_like 120..191 CDD:410012 23/75 (31%)
rumpXP_551368.5 None
Blue background indicates that the domain is not in the aligned region.

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