DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and LOC1280439

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:XP_320292.4 Gene:LOC1280439 / 1280439 VectorBaseID:AGAMI1_000289 Length:209 Species:Anopheles gambiae


Alignment Length:174 Identity:38/174 - (21%)
Similarity:64/174 - (36%) Gaps:58/174 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 NAMKYWWQQGEEKGNE--DQKNRFYARRNYFGWANMAKGK------------TYRVGCSYIMCGD 242
            :||.|::   .:|.||  :::.|...||.:|..:...:.|            .:.|.....:||.
Mosquito   203 SAMAYFF---VKKCNESFEREIRNPRRRRHFSVSQQFQVKENLRALYLGTRLVFVVLSCIALCGI 264

  Fly   243 GESALFTCLYNEKAQCEKEMIYENGKP-CCE--DKDCFTYPGSKCL-----VPE----------- 288
            |.:|||               |:...| ||.  :...|.:|...||     ||:           
Mosquito   265 GITALF---------------YDLIPPFCCHFVENFLFLHPYLSCLTAIFSVPQWKNEFREVSVL 314

  Fly   289 GLCQAPSMVKDDGGSFQCDNSL-VSDVTRNFTLEQHNFYRSRLA 331
            |.|.....:|     .:.:|:: :.|.|:....|. :.|..:||
Mosquito   315 GRCLKIGRLK-----IESENAMEIQDSTKKMGTET-DLYFQQLA 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774
RRM2_SRSF4_like 120..191 CDD:410012
LOC1280439XP_320292.4 None
Blue background indicates that the domain is not in the aligned region.

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