DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and Caper

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:XP_317010.4 Gene:Caper / 1277542 VectorBaseID:AGAMI1_007869 Length:595 Species:Anopheles gambiae


Alignment Length:250 Identity:73/250 - (29%)
Similarity:98/250 - (39%) Gaps:63/250 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 TYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVE------------DRRGGRSGG 199
            |:.| |:.|:..      .:||...|     |.|||...::|:|            ....|.:..
Mosquito     5 TFYD-HETRKEH------HISDKMAA-----DDELNNEVLNLLEAPYNKEDDAAASPVENGATTN 57

  Fly   200 GGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRG-------------------GR 245
            |....:....|.|||.|||||.|.|.|.....|.:.|.|.:.|.                   ||
Mosquito    58 GEKKSKENGHSKSSRHRSRSRERERERERDRDRERDRERERERDRERDRDGEKASKKHRSGSPGR 122

  Fly   246 SKSKSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRE---RDSRSRSRSVSKRESRSRSR 307
            ::.|...:|:.||:|||...||.||.:||...|.:|...:||   ...|||.|.    :.|.|||
Mosquito   123 NRDKERRRSKDRSKSRSPARRDRSKDRSKEKDRGKSDHHRREVVVEKRRSRDRV----DHRRRSR 183

  Fly   308 SKSIHRDSRSRD--------RSASAENKSRSRSRS-----RSASPKNGNASPDRN 349
            .:...|.|||||        |.:.:....|.|.|.     |..||....:..||:
Mosquito   184 ERDYRRRSRSRDGGRGMGRGRRSMSPKPYRGRGRGGSGYYRDRSPLEEMSQEDRD 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774
RRM2_SRSF4_like 120..191 CDD:410012 13/55 (24%)
CaperXP_317010.4 None
Blue background indicates that the domain is not in the aligned region.

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