DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and srsf4

DIOPT Version :9

Sequence 1:NP_001014619.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:XP_004911639.2 Gene:srsf4 / 100038227 XenbaseID:XB-GENE-493077 Length:741 Species:Xenopus tropicalis


Alignment Length:359 Identity:199/359 - (55%)
Similarity:234/359 - (65%) Gaps:44/359 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69
            |||:|.|.:..||||:||||||:|:..::.:|||||||||||.|||:|||||:||:||.||||:|
 Frog     8 RVYIGRLSHRARERDVERFFKGFGKIVEVDLKNGYGFVEFEDSRDAEDAVYEMNGRELCGERVIV 72

  Fly    70 EPARGTARGSNRDRYDDR--YGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVS 132
            |.||...|       |.|  ||.|:||              |.:||||:||.|||.|||||||.|
 Frog    73 EHARAPRR-------DIRSGYGYRKGG--------------SDKYGPPVRTMYRLRVENLSSRCS 116

  Fly   133 WQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRS 197
            ||||||:|||||||||||||::|:||||:||.|.|||:.|:||||.:|:|||:|.|||||.|.|:
 Frog   117 WQDLKDFMRQAGEVTYADAHQRRQNEGVIEFRSYSDMRRALEKLDGSEINGRKIQLVEDRAGSRN 181

  Fly   198 GGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRG-GRSKSKSPVKSRSRSRS- 260
              .|.|.|.||||.|.|||| |..|||||..|||||:.|.||:||. .|..|:|..:.|..||| 
 Frog   182 --KGSSSRSRSRSRSRRSRS-SHSRSRSRSRSHSRSRQRERSRSRSKERRSSRSHSRKRRESRSI 243

  Fly   261 --RSNKSRDVSK----SKSKSHSRTRSRS-PKRERDSRS------RSRSVSKRESRSRSRSKSIH 312
              |..:||.|||    |:|.|..|..||| .|..|.|||      .||||||....|||.||. .
 Frog   244 SKRRRQSRSVSKGRRASRSVSKGRRASRSVSKGRRASRSVSKGRRASRSVSKGRRASRSVSKG-R 307

  Fly   313 RDSRSRDRSASA-ENKSRSRSRSRSASPKNGNAS 345
            |.|||..:...| .:.|:.|..||||| |...||
 Frog   308 RASRSASKGRRASRSASKGRRASRSAS-KGRRAS 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_001014619.2 RRM1_SRSF4_like 5..74 CDD:240783 46/68 (68%)
RRM2_SRSF4_like 120..191 CDD:241044 53/70 (76%)
srsf4XP_004911639.2 RRM_SF 6..77 CDD:418427 46/68 (68%)
RRM_SF 104..176 CDD:418427 54/71 (76%)
ser_rich_anae_1 <249..>456 CDD:411418 43/94 (46%)
PRK12678 352..>573 CDD:237171
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 113 1.000 Domainoid score I6077
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 339 1.000 Inparanoid score I2321
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1315388at2759
OrthoFinder 1 1.000 - - FOG0000217
OrthoInspector 1 1.000 - - otm49341
Panther 1 1.100 - - O PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X517
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

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