DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and NAM8

DIOPT Version :10

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:408 Identity:80/408 - (19%)
Similarity:149/408 - (36%) Gaps:127/408 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IFIGGLSTQTTVETL-RGFFSQFGIVADAVVLRDPVSNHSRGFGFV-----------------TY 80
            ||:|.|:...|...| ..|.:::...:.|.::.|.|:..|:|:|||                 .:
Yeast   165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229

  Fly    81 VDPKSVEI--VQRARPH------------TIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAG 131
            ::.:::::  ....:.|            :::|:.|:::.....|.|...|.     .:.|.:..
Yeast   230 LNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGN-----NNMGFKRN 289

  Fly   132 FM-------------------NSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQR 177
            .|                   |:..:|:|||.....|:.:|.||..||.:..||:.:.      :
Yeast   290 HMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVG------K 348

  Fly   178 AFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSY 242
            ..||:::||..|||.|:|..:.:.:            |:.|.|.....|.:...:..|...::|.
Yeast   349 CCGFVQYVDRLSAEAAIAGMQGFPI------------ANSRVRLSWGRSAKQTALLQQAMLSNSL 401

  Fly   243 -------NYNNPNYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPTPGQNMAAS-LPSQQLAEHS-- 297
                   ....|||. |:..|...               || ..|..|:::: ||..|:..:|  
Yeast   402 QVQQQQPGLQQPNYG-YIPSSTCE---------------AP-VLPDNNVSSTMLPGCQILNYSNP 449

  Fly   298 ---LNGHGPDMWSSYPKTGIYSAQ------EWTSSKVAEWGPK----AGHKHAQTSTNDRAKIDL 349
               .||.|.:.:|.|......:.|      :.:|..::..|.:    .|.:....|||       
Yeast   450 YANANGLGSNNFSFYSNNNATNTQATSLLADTSSMDLSGTGGQQVIMQGSEAVVNSTN------- 507

  Fly   350 KELQAATFNNKLDFGARG 367
                  ...|:|:.|:.|
Yeast   508 ------AMLNRLEQGSNG 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069 18/102 (18%)
RRM2_hnRNPA_like 137..209 CDD:409766 21/71 (30%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023
RRM2_SECp43_like 162..241 CDD:409781 15/75 (20%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782 24/88 (27%)
Blue background indicates that the domain is not in the aligned region.

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