DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rbp4 and RBP45A

DIOPT Version :9

Sequence 1:	NP_476935.1	Gene:	Rbp4 / 41668	FlyBaseID:	FBgn0010258	Length:	428	Species:	Drosophila melanogaster
Sequence 2:	NP_568815.1	Gene:	RBP45A / 835581	AraportID:	AT5G54900	Length:	387	Species:	Arabidopsis thaliana

Alignment Length:	278	Identity:	74/278 - (26%)
Similarity:	110/278 - (39%)	Gaps:	63/278 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 GDGKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQ-FGIVADAVVLRDPVSNHSRGFGFVTY 80
            |.|:...:.||.:|  .||:|.|:.:.|...|...|.. :|.|..|.|:.|..:..|:|:|||.:
plant   141 GAGEKRFQTEGPDH--TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203

  Fly    81 VDPKSVEIVQRA-----------RPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMN 134
            .|...   ..||           ||..|..  ...|:|||.|........|:..|.     ...|
plant   204 ADENE---QMRAMTEMNGQYCSTRPMRIGP--AANKNALPMQPAMYQNTQGANAGD-----NDPN 258

  Fly   135 SKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKH 199
            :..||:|||.....::.::..|.|||.:..||:    ..|::  .||:::.:.:|||.||:
plant   259 NTTIFVGGLDANVTDDELKSIFGQFGELLHVKI----PPGKR--CGFVQYANKASAEHALS---- 313

  Fly   200 WILQTLVEVKRSTQKADRRFRF-----PIFSSVRA-----GY--IPPQPATADSYNYNNPNYNPY 252
                    |...||...:..|.     |...|.:|     ||  .||||.....|....|..:
plant   314 --------VLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGYGYAAQPPTQD-- 368

  Fly   253 LAQSVLPPSAFTNGWAHY 270
                   |:|:..|:..|
plant   369 -------PNAYYGGYTGY 379

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	26/88 (30%)
Rbp4	NP_476935.1	RRM2_hnRNPA_like	137..209	CDD:240774	19/71 (27%)
RBP45A	NP_568815.1	RRM1_SECp43_like	61..138	CDD:409780
		RRM2_SECp43_like	153..232	CDD:409781	24/85 (28%)
		RRM3_NGR1_NAM8_like	259..330	CDD:409782	23/88 (26%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910