DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rbp4 and AT5G53700

DIOPT Version :9

Sequence 1:	NP_476935.1	Gene:	Rbp4 / 41668	FlyBaseID:	FBgn0010258	Length:	428	Species:	Drosophila melanogaster
Sequence 2:	NP_200181.2	Gene:	AT5G53700 / 835451	AraportID:	AT5G53700	Length:	251	Species:	Arabidopsis thaliana

Alignment Length:	291	Identity:	62/291 - (21%)
Similarity:	90/291 - (30%)	Gaps:	103/291 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly   163 ASVKLLMDRETGRQRAFG--FLEFVDPSSAE--KALAPRKHW-----ILQTLVEVKRSTQKADRR 218
            ::|:.|..::|..::.|.  .:|..|.|..|  ..||..||:     |:.  ::|.|..:|  |.
plant     4 SAVRGLESKDTNNRKCFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVD--IDVPRDFKK--RI 64

  Fly   219 FRFPIFSSVRA--GYIPPQPATADSYNYNNPNYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPTPG 281
            .:.|:|....|  |..|...|...|                   .....||
plant    65 LKSPLFIIFHAKEGESPVDKALELS-------------------GTDVGGW-------------- 96

  Fly   282 QNMAASLPSQQL-----------AEHSLNGHGPDMWSSYPKTGIY--------SAQEWTSSKVAE 327
            ..:..|||.||:           .|.:|.....|..|:..|..:.        |..|.|...|..
plant    97 NVVVKSLPGQQMYRDPGGVDRFKGERTLIVKVYDTPSTLSKIDLQIGLCKHFSSCGEVTGISVLV 161

  Fly   328 WGPKAGHKHAQTSTNDRAKIDLKELQAATFNNKLDFGARGDADRMSGAGLGLGLTGGAAVGVGAI 392
            .|....|:       .:|::|:.              .:|..|:      .|.|:|..|.|
plant   162 HGNLCCHE-------SKARVDIM--------------GKGCVDK------ALELSGRTADG---- 195

  Fly   393 KKWPTQDYKVFKPA---KSPTNGVIPKIGKE 420
              |....|.|..||   ..||....|.||.|
plant   196 --WKIVVYFVVPPAGRKLKPTGSGHPTIGVE 224

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621
Rbp4	NP_476935.1	RRM2_hnRNPA_like	137..209	CDD:240774	13/54 (24%)
AT5G53700	NP_200181.2	RRM_SF	22..100	CDD:302621	22/114 (19%)
AT5G53700	NP_200181.2	RRM_SF	123..200	CDD:302621	20/109 (18%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010