DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rbp4 and AT5G51300

DIOPT Version :9

Sequence 1:	NP_476935.1	Gene:	Rbp4 / 41668	FlyBaseID:	FBgn0010258	Length:	428	Species:	Drosophila melanogaster
Sequence 2:	NP_001032055.1	Gene:	AT5G51300 / 835204	AraportID:	AT5G51300	Length:	804	Species:	Arabidopsis thaliana

Alignment Length:	244	Identity:	57/244 - (23%)
Similarity:	85/244 - (34%)	Gaps:	52/244 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly    99 NKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMN------SKRIFLGGL------KEYHDENI 151
            |.:.|....:|....|:...:....||.|....:.|      |....||..      |||.:.|:
plant   418 NFLAELGGTVPESSLKQSATLALGPGSSGSNPPWANNAGNGASAHPGLGSTPTKPPSKEYDETNL 482

  Fly   152 -------------VREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQ 203
                         :...||.||.:...|::.||.||..:.:||:::.|...|..|:.....:..:
plant   483 YIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFE 547

  Fly   204 TLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYNNPNYNPYLAQSVLPPSAF----- 263
            ......|...|:......|       |...|||.|        ..|.|    |..||.|:
plant   548 GRTLAVRIAGKSPPPIAPP-------GPPAPQPPT--------QGYPP----SNQPPGAYPSQQY 593

  Fly   264 -TNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNG-HGPDMWSSYP 310
             |.|::...:|..| |.|..:..|..|....:.|.::| |.|.....||
plant   594 ATGGYSTAPVPWGP-PVPSYSPYALPPPPPGSYHPVHGQHMPPYGMQYP 641

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	2/10 (20%)
Rbp4	NP_476935.1	RRM2_hnRNPA_like	137..209	CDD:240774	20/90 (22%)
AT5G51300	NP_001032055.1	SF1-HH	126..237	CDD:318504
		SF1_like-KH	242..358	CDD:239088
		AIR1	<363..405	CDD:331526
		RRM_SF	480..556	CDD:327398	16/75 (21%)
		RRM	<481..673	CDD:330708	43/181 (24%)
		Atrophin-1	<579..>791	CDD:331285	19/68 (28%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910