DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rbp4 and FCA

DIOPT Version :9

Sequence 1:	NP_476935.1	Gene:	Rbp4 / 41668	FlyBaseID:	FBgn0010258	Length:	428	Species:	Drosophila melanogaster
Sequence 2:	NP_001319956.1	Gene:	FCA / 827323	AraportID:	AT4G16280	Length:	747	Species:	Arabidopsis thaliana

Alignment Length:	336	Identity:	89/336 - (26%)
Similarity:	136/336 - (40%)	Gaps:	78/336 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTI 97
            |:|:|.:....|.|.:|.:|.|.|.|.:..:::|..:...:|..||.|...|..:...||    :
plant   121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA----L 181

  Fly    98 DNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKR---------IFLGGLKEYHDENIVR 153
            .|:|     .||       ||.|.|      :..:.:.:|         :|:|.|.:...|..|.
plant   182 HNQI-----TLP-------GGTGPV------QVRYADGERERIGTLEFKLFVGSLNKQATEKEVE 228

  Fly   154 EYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALA----------------PRKHWIL 202
            |.|.|||.|..|.|:.| |..:.|..||:::   ||.|.|:|                |    ::
plant   229 EIFLQFGHVEDVYLMRD-EYRQSRGCGFVKY---SSKETAMAAIDGLNGTYTMRGCNQP----LI 285

  Fly   203 QTLVEVKRSTQKADRRFRFPI--FSSVRAGYIPPQPAT--ADS---YNYNNPNYNPYLAQSVLPP 260
            ....|.||......|....|:  .|..|.....|:|.:  .||   .::.|| :.|..:::|.||
plant   286 VRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSHTNP-WRPATSRNVGPP 349

  Fly   261 SAFTNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGPDMWSSYPKTGIYSAQEWTSSKV 325
            |  ..|........:||  |||   |:|||.|  ...|.|:|....:..|..|:      :||..
plant   350 S--NTGIRGAGSDFSPK--PGQ---ATLPSNQ--GGPLGGYGVPPLNPLPVPGV------SSSAT 399

  Fly   326 AEWGPKAGHKH 336
            .:...:|..:|
plant   400 LQQQNRAAGQH 410

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	21/76 (28%)
Rbp4	NP_476935.1	RRM2_hnRNPA_like	137..209	CDD:240774	26/96 (27%)
FCA	NP_001319956.1	LSM_int_assoc	<121..497	CDD:330438	89/336 (26%)
		RRM1_FCA	121..200	CDD:241077	26/100 (26%)
		RRM2_FCA	212..291	CDD:241081	24/86 (28%)
		WW	597..624	CDD:238122
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910