DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and PHIP1

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_191094.1 Gene:PHIP1 / 824700 AraportID:AT3G55340 Length:597 Species:Arabidopsis thaliana


Alignment Length:439 Identity:95/439 - (21%)
Similarity:155/439 - (35%) Gaps:86/439 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTY---VDPKS 85
            |||......|:::||:..|:|.:.:|.:|...|::........|......|..|:|:   ...|.
plant   153 KEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKR 217

  Fly    86 VEIVQRA----RPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEY 146
            .....||    |..||...:..|..::||:....|.....|.|          ..|:::|.|...
plant   218 ALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDG----------YNRVYIGNLAWD 272

  Fly   147 HDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRS 211
            ..|..:|:.||.. .:.||:|..::|||..:.:..::|.|..|...||...:..|....|::..:
plant   273 TTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKICCA 336

  Fly   212 TQKADRRFRFPIFSSVRAGY--------IPPQPATADSYNYNNPNY--NPYLAQSVLPPSAFTNG 266
            .:........|..::....|        ..|.||.|.....::.||  ....:..|.....:..|
plant   337 LKDRPATDHTPGETNNAGSYNMEDTYAAADPVPALAGRSEVDDGNYFATTVSSSKVKRRVCYECG 401

  Fly   267 WAHYVIPMAP----------KPTPGQNMAASLPSQQ---LAEHSLNGHGPDMWSSYPKT-----G 313
            ...::....|          ....||......|:.|   |.::|  |....|..:|..|     |
plant   402 EKGHLSTACPIKLQKADDQANSKLGQETVDGRPAMQSYGLPKNS--GDSYYMNETYASTNETYNG 464

  Fly   314 IYSAQEWTSSKVA-----EWGPKAGHKHA------QTSTNDRAKIDLKELQAA------------ 355
            .|||....:.||.     |.|.| ||...      |.:::..:.:|.:.::|.            
plant   465 GYSASAVGTGKVKRRNCYECGEK-GHLSTACPIKLQNTSHTNSTLDHQTVEAGPTQVTSYSLQKK 528

  Fly   356 ---TFNNKLDFGARGDADRMSGAGLGLGLTGGA-------AVGVGAIKK 394
               |.||    |.....:..:...:.:.:|.||       ||..|.|||
plant   529 TRDTENN----GGSFMDESYATVPISIDVTNGANDASLTSAVSTGKIKK 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 19/83 (23%)
RRM2_hnRNPA_like 137..209 CDD:240774 20/71 (28%)
PHIP1NP_191094.1 RRM <129..327 CDD:223796 45/184 (24%)
RRM1_PHIP1 163..234 CDD:240717 16/70 (23%)
RRM2_PHIP1 263..334 CDD:240718 20/71 (28%)
PTZ00368 393..592 CDD:173561 39/188 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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