DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and SUA

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001190084.1 Gene:SUA / 824590 AraportID:AT3G54230 Length:1008 Species:Arabidopsis thaliana


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621
RRM2_hnRNPA_like 137..209 CDD:240774
SUANP_001190084.1 PHA02896 <74..>219 CDD:165222
RRM1_RRM2_RBM5_like 270..350 CDD:240759
ZnF_RBZ 382..405 CDD:197784
RanBP2-type Zn finger 383..402 CDD:275376
RRM1_RRM2_RBM5_like 431..511 CDD:240759
OCRE_SUA_like 579..631 CDD:293885
OCRE repeat 1 583..590 CDD:293885
OCRE repeat 2 591..598 CDD:293885
OCRE repeat 3 599..606 CDD:293885
OCRE repeat 4 607..614 CDD:293885
OCRE repeat 5 616..623 CDD:293885
G_patch 927..971 CDD:197727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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