DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp4 and Rbm31y

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_083246.1 Gene:Rbm31y / 74484 MGIID:1921734 Length:565 Species:Mus musculus


Alignment Length:463 Identity:118/463 - (25%)
Similarity:182/463 - (39%) Gaps:135/463 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NCASSACLGDCKGDGKTAIKEEGY--------EHLRKIFIGGLSTQTTVETLRGFFSQFGIVADA 61
            |.||.|    .:.|.:|....||:        :...|:||||||.:.:.:.|..:.|:||.:.|.
Mouse     2 NTASLA----VEKDNETEQFREGFKIDATKNQQDASKMFIGGLSQEMSKQVLLEYLSKFGEIIDF 62

  Fly    62 VVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSF 126
            ::..||.:..|||||||.:.|..:||.|.:.:.|.:|.|.:|         |||...:       
Mouse    63 IIKTDPNTGLSRGFGFVLFKDSATVEKVLQVKDHKVDGKKIE---------FKRAKAL------- 111

  Fly   127 GCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAE 191
              |:.|.| |:||:|||.....|..:|.||..||.:.:::|.:..:|..:|||||::::|.:|..
Mouse   112 --ESQFPN-KKIFVGGLNPRLSEEKIRAYFGTFGQIEAIELPLCSDTRERRAFGFIKYMDENSVR 173

  Fly   192 KALAPRKHWILQTLVEVKR-----------STQKA---DR-RFRFP---IFSSVRAGYIP----- 233
            |.|..|.|:|..:..|||.           |.:||   || |...|   :.::.|.|..|     
Mouse   174 KVLENRYHFIGSSRCEVKMAYPKENPARQLSKRKAIAKDRTRKSVPAVELENNWRGGGSPSFHIM 238

  Fly   234 ----PQPATADSY-------------------------NYNNPNYNPYLAQS--------VLPPS 261
                .|.|..|::                         |..:.|.|.::..|        .|..|
Mouse   239 ANSEAQEANQDAHRAGSYTSRANSDVTLTNACGFRDSPNAFHVNSNVFVTNSTTFIASSNALRSS 303

  Fly   262 AFTNGWAHYVIPMAPKPTPGQNMAASLPSQQL--AEHSL----NGHGPDMW--SSYPKT-GIYSA 317
            ..|.|.:||.:...|.............|..|  ::::|    |..|...:  ::||.| ||   
Mouse   304 TNTVGVSHYTLDANPNTFLASQYTLGTISNTLRTSQYTLGTYPNALGVSQYALAAYPNTFGI--- 365

  Fly   318 QEWTSSKVAEWGPKAGHKHAQTSTNDRAKIDLKELQAATFNNKLDFGARGDADRMSGAGLGLGLT 382
                                       .:..|:..|.|.:.|:...|...||     .|:|...:
Mouse   366 ---------------------------NQYPLEADQNAFWTNQYPLGTYSDA-----FGIGQYAS 398

  Fly   383 GGAAVGVG 390
            |.:..|.|
Mouse   399 GTSPNGFG 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 29/76 (38%)
RRM2_hnRNPA_like 137..209 CDD:240774 26/71 (37%)
Rbm31yNP_083246.1 RRM_SF 35..108 CDD:302621 30/81 (37%)
RRM_SF 119..193 CDD:302621 28/73 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.