DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and CG34354

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster


Alignment Length:347 Identity:75/347 - (21%)
Similarity:120/347 - (34%) Gaps:104/347 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYV----------------- 81
            ||:|.||.:...:.|:..|:.||.::|..|:|||.:..|:|:|||::|                 
  Fly    98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWL 162

  Fly    82 ------------DPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMN 134
                        .|.:.:....|:|.|.|....::.   |.......||:.      |..:||:|
  Fly   163 GSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSS---PTNCTVYCGGIN------GALSGFLN 218

  Fly   135 SKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKAL-APRK 198
                          |.|:::.||.:|.:..:::..|      :.:.|:.|....:|..|: |...
  Fly   219 --------------EEILQKTFSPYGTIQEIRVFKD------KGYAFVRFSTKEAATHAIVAVNN 263

  Fly   199 HWILQTLVEVKRSTQKADRRFR-----------FPIFSSVR-----------AGYIPPQPATADS 241
            ..|.|..|:.....:..|....           ||..|:..           |||..| ||    
  Fly   264 TEINQQPVKCAWGKESGDPNHMSAIAGGALAQGFPFGSAAAAAAAAAYGQQVAGYWYP-PA---- 323

  Fly   242 YNYNNPNYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGPDMW 306
                 |.|......|.|.|..|..|...:        |.||...    .||.....:....|..|
  Fly   324 -----PTYPAAAPASALQPGQFLQGMQGF--------TYGQFAG----YQQAGYMGMGVQLPGTW 371

  Fly   307 SSY-PKTGIYSAQEWTSSKVAE 327
            .|. |:..:.||...|:.::.:
  Fly   372 QSVPPQPQLASAAAATAPQITQ 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 25/104 (24%)
RRM2_hnRNPA_like 137..209 CDD:240774 14/72 (19%)
CG34354NP_001097953.2 RRM2_TIA1_like 97..171 CDD:240799 20/72 (28%)
RRM3_TIA1_like 202..278 CDD:240800 20/101 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464028
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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