DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and AT5G03495

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001078524.1 Gene:AT5G03495 / 5008197 AraportID:AT5G03495 Length:226 Species:Arabidopsis thaliana


Alignment Length:52 Identity:13/52 - (25%)
Similarity:26/52 - (50%) Gaps:0/52 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 LKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKAL 194
            |:||..:.::.::|:..|.:..:.:..|.|.|..::..|:........||||
plant    40 LREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVAFMCIKGEGGEEKAL 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621
RRM2_hnRNPA_like 137..209 CDD:240774 13/52 (25%)
AT5G03495NP_001078524.1 RRM_SF 30..108 CDD:302621 13/52 (25%)
RRM_SF 132..198 CDD:302621
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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