Protein Alignment Rbp4 and msi1

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: XP_012816886.1
• Gene: msi1 / 496961
• XenbaseID: XB-GENE-490596
• Length: 347
• Species: Xenopus tropicalis
• Alignment Length: 350
• Identity: 102/350 - (29%)
• Similarity: 143/350 - (40%)
• Gaps: 83/350 - (23%)

  Fly    33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTI 97
            |:||||||.|||.|.||.:||.||.|.:.:|:|||::..||||||||::|...|:.|.....|.:
 Frog    21 KMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 85

  Fly    98 DNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPV 162
            |:|.::.|.|.||:...:               ....:|:||:|||........|::||.|||.|
 Frog    86 DSKTIDPKVAFPRRAQPK---------------MVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135

  Fly   163 ASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQKADRRFRFPIFS-- 225
            ....|:.|:.|.|.|.|||:.|......||......|.|...:||.|::..|       .:.|
 Frog   136 DDAMLMFDKTTNRHRGFGFVTFEGEDIVEKVCDIHFHEINNKMVECKKAQPK-------EVMSPT 193

  Fly   226 -SVRA-------------------GYIPPQPAT---------ADSYNYNNPNYNPYLAQSVLPPS 261
             |||.                   ||...|.||         |..|.|..|.:.  :.::.||.:
 Frog   194 GSVRGRSRVMPYGMDAFMLGIGMLGYPGFQAATYASRSYTGIAPGYTYQFPEFR--VERTPLPGA 256

  Fly   262 AFTNGWAHYVIPMAPKPT--PGQNMAASLPSQQLAEHSLNGHGPDMWSSY-------PKTGIYSA 317
                       |:.|:.|  |   :.|..|....|...:.|..|.....:       |...:|.|
 Frog   257 -----------PVLPELTAIP---LTAYGPVAAAAAAVVRGSTPTRTGGFLGTSSPGPMAELYGA 307

  Fly   318 QEWTSS-----KVAEWGPKAGHKHA 337
            ....|:     ..|...|..|..|:
 Frog   308 ANQESAVSSYISAASPAPSTGFGHS 332

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	38/76 (50%)
		RRM2_hnRNPA_like	137..209	CDD:240774	27/71 (38%)
msi1	XP_012816886.1	RRM1_MSI1	20..96	CDD:241203	37/74 (50%)
		PABP-1234	<32..324	CDD:130689	90/329 (27%)
		RRM2_MSI	110..183	CDD:240769	27/72 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910