DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and MSI1

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_002433.1 Gene:MSI1 / 4440 HGNCID:7330 Length:362 Species:Homo sapiens


Alignment Length:356 Identity:105/356 - (29%)
Similarity:140/356 - (39%) Gaps:80/356 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTI 97
            |:||||||.|||.|.||.:|.|||.|.:.:|:|||::..||||||||::|...|:.|.....|.:
Human    21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 85

  Fly    98 DNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPV 162
            |:|.::.|.|.||:...:               ....:|:||:|||........|::||.|||.|
Human    86 DSKTIDPKVAFPRRAQPK---------------MVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135

  Fly   163 ASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRS--------TQKADRRF 219
            ....|:.|:.|.|.|.|||:.|......||......|.|...:||.|::        |..|..|.
Human   136 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200

  Fly   220 R-FP------IFSSVRAGYIPPQPAT---------ADSYNYNNPNY----NPYLAQSVLP----- 259
            | .|      :......||...|..|         |..|.|..|.:    .|..:..|||     
Human   201 RVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAI 265

  Fly   260 -------------PSAFTNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGPDMWSSYPK 311
                         .:|...|...:...|||.|       .|.||:       .|......|..|.
Human   266 PLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPP-------GSTPSR-------TGGFLGTTSPGPM 316

  Fly   312 TGIYSAQEWTSS-----KVAEWGPKAGHKHA 337
            ..:|.|....|.     ..|...|..|..|:
Human   317 AELYGAANQDSGVSSYISAASPAPSTGFGHS 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 38/76 (50%)
RRM2_hnRNPA_like 137..209 CDD:240774 27/71 (38%)
MSI1NP_002433.1 RRM1_MSI 21..96 CDD:409990 37/74 (50%)
PABP-1234 <32..339 CDD:130689 93/335 (28%)
RRM2_MSI 110..183 CDD:240769 27/72 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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