Protein Alignment Rbp4 and msi

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 399
• Identity: 108/399 - (27%)
• Similarity: 167/399 - (41%)
• Gaps: 74/399 - (18%)

  Fly    33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTI 97
            |:|:||||.||:.:.|:.:|:.||.|.|.::::|||:..||||||:|:.:|.:||.|.:...||:
  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268

  Fly    98 DNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPV 162
            |.|.::.|||.|:...::..                .:|:||:||:.:......|:.||||||||
  Fly   269 DGKKIDPKHATPKNRPRQAN----------------KTKKIFVGGVSQDTSAEEVKAYFSQFGPV 317

  Fly   163 ASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQK-----ADRRFRFP 222
            ....:|||::|.|.|.|||:.|.:....::......|.|....||.|::..|     |.:..:..
  Fly   318 EETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKR 382

  Fly   223 IFSSVRAGYIPPQP-----ATADSYNYNNP---NYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPT 279
            |........:|..|     |........||   ..||  .|.:..|:|........:|...|...
  Fly   383 IMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNP--TQLLQSPAAAAAAQQAALISQNPFQV 445

  Fly   280 PGQNMAASLPSQQLAEHSLNGHGPDMWSSYPKTGIYSA-------------------QEWTSSKV 325
            .....|||:.:|.       |.| .:.::||:|.::|.                   |...:..|
  Fly   446 QNAAAAASIANQA-------GFG-KLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQSV 502

  Fly   326 AEWGPKAGHKHAQTSTND--------RAKIDLKELQAATFNNKLDFGARGDADRMSGAGLGLGLT 382
            |    .|.|.|.|.....        .|.:...:.|..:.:|.:.    ..|.:...|.....|.
  Fly   503 A----AAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVS----NPASQAHSAAAAAALA 559

  Fly   383 GGAAVGVGA 391
            ..||.|.||
  Fly   560 ANAANGAGA 568

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	35/76 (46%)
		RRM2_hnRNPA_like	137..209	CDD:240774	27/71 (38%)
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	31/70 (44%)
		RRM2_MSI	292..365	CDD:240769	27/72 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463995
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840