Protein Alignment Rbp4 and sqd

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 246
• Identity: 69/246 - (28%)
• Similarity: 111/246 - (45%)
• Gaps: 31/246 - (12%)

  Fly     2 DAGNCASSACLGDCKGDGKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRD 66
            |||...|:    :...|.::|...:..:. ||:|:||||.:||.:.||..|.::|.:....|..|
  Fly    31 DAGAAGST----NGSSDNQSAASGQRDDD-RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTD 90

  Fly    67 PVSNHSRGFGFVTYVDPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAG 131
            |.:..||||.|:.:.:.::::.|..|..|.|::|.|:.|.|..|..
  Fly    91 PQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG------------------- 136

  Fly   132 FMNSKRIFLGGL-KEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALA 195
                 :||:||| .|..||.| :.||.|||.:..|::..|::..:::.|.|:.|.........|.
  Fly   137 -----KIFVGGLTTEISDEEI-KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK 195

  Fly   196 PRKHWILQTLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYNN 246
            ..|..|....|:|||:|.|.:.:....:....|.|....:........|||
  Fly   196 TPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNN 246

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	28/76 (37%)
		RRM2_hnRNPA_like	137..209	CDD:240774	23/72 (32%)
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	25/70 (36%)
		RRM2_hnRNPD_like	137..211	CDD:240775	25/74 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45464021
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840