DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and hnrnpabb

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_998467.1 Gene:hnrnpabb / 406594 ZFINID:ZDB-GENE-040426-2516 Length:309 Species:Danio rerio


Alignment Length:341 Identity:83/341 - (24%)
Similarity:135/341 - (39%) Gaps:89/341 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GDGKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYV 81
            |:|......:..|...|:|:||||..|:.:.|:.:||:||.|.|..:..|..:..||||||:.:.
Zfish    30 GEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFK 94

  Fly    82 DPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEY 146
            :..||:.|.:.:.|.:|.:.::.|.|:.   .|:                 ...|:||:|||...
Zfish    95 ESDSVDRVLQQKEHRLDGRQIDPKRAMA---IKK-----------------EPVKKIFVGGLNPE 139

  Fly   147 HDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRS 211
            ..|..:||||..||.:.:::|..|.:|.::|.|.|:.|.:..:.:|.|..:.|.:..:..|:|.:
Zfish   140 TTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKIA 204

  Fly   212 TQK---ADRRFRFPIFSSVRAGYI---------PPQPATADSYNYNNPNYN----PYLAQSVLPP 260
            ..|   ..::|      ..|.|..         |.|.......||.|..|.    .|..|     
Zfish   205 QPKEIYQQQQF------GARGGGFGGRGRGRGGPGQSWNQGYNNYWNQGYGGQGYGYGGQ----- 258

  Fly   261 SAFTNGWAHYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGPDMWSSYPKTGIY---SAQEWTS 322
                .|:..|                            .|:|...:||    |.|   |..::|.
Zfish   259 ----QGYGGY----------------------------GGYGNYDYSS----GYYGYGSGYDYTD 287

  Fly   323 SKVAEWGP---KAGHK 335
            ...|.:|.   :.||:
Zfish   288 QGAASYGKTPRRGGHQ 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 28/76 (37%)
RRM2_hnRNPA_like 137..209 CDD:240774 23/71 (32%)
hnrnpabbNP_998467.1 CBFNT 2..45 CDD:285369 3/14 (21%)
RRM1_hnRNPAB 46..120 CDD:241201 27/73 (37%)
RRM_SF 125..204 CDD:302621 25/95 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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