Protein Alignment Rbp4 and cocoon

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Alignment Length: 294
• Identity: 79/294 - (26%)
• Similarity: 119/294 - (40%)
• Gaps: 77/294 - (26%)

  Fly    18 DGKTAIKEEGYEHLR--KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTY 80
            :..||..:....|||  .:.:.|||..||.:.||.:|..:|.|..|.:.:|..|.||:|||||.:
  Fly    91 ENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRF 155

  Fly    81 VDPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKE 145
             ....|::...::.|:||.:..|.|....|       |:|:.      |.|     ::|:|...|
  Fly   156 -GSYDVQMHVLSKRHSIDGRWCEVKVPASR-------GMGNQ------EPG-----KVFVGRCTE 201

  Fly   146 YHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEV-- 208
            ..:.:.:|||||:||.|..|.:     ....|||.|:.|:|| ...:.:...||.|....|.|
  Fly   202 DIEADDLREYFSKFGEVIDVFI-----PKPFRAFSFVTFLDP-YVPRVVCGEKHIIKGVSVHVST 260

  Fly   209 --KRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYNNPNYNPYLAQSVLPPSAFTNGWAHYV 271
              |::.|..::.|:                    :.||||.:.|            |
  Fly   261 ADKKNVQNKNQLFQ--------------------TNNYNNLDNN------------F-------- 285

  Fly   272 IPMAPKPTPGQNMAASLPSQQLAEHSLNGHGPDM 305
                 |..|..|.... |:...:.||.|.||..|
  Fly   286 -----KMQPANNFRMH-PANNFSMHSFNPHGYQM 313

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	26/76 (34%)
		RRM2_hnRNPA_like	137..209	CDD:240774	24/75 (32%)
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	26/76 (34%)
		RRM2_TDP43	193..262	CDD:240768	24/74 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910