DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and hnrnpa0

DIOPT Version :9

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_988923.1 Gene:hnrnpa0 / 394519 XenbaseID:XB-GENE-1000573 Length:309 Species:Xenopus tropicalis


Alignment Length:365 Identity:107/365 - (29%)
Similarity:157/365 - (43%) Gaps:81/365 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPH 95
            |.|:|||||:.|||.|.||..|..:|.:.|.||:.:|.:..||.||||||......:....|.||
 Frog    11 LCKLFIGGLNVQTTEEGLRQHFETYGQLTDCVVVINPQTKRSRCFGFVTYSSAAEADAAVEASPH 75

  Fly    96 TIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFG 160
            .:|...||.|.|:.|:|..:.|....|             |::|:|||||...|:.:.|:|:|||
 Frog    76 VVDGNNVELKRAVSREDSAKPGAHAKV-------------KKLFVGGLKEDVGESDLLEHFAQFG 127

  Fly   161 PVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRS------TQKADRRF 219
            .|..|:::.|:.:|::|.|||:.|.:..||:||...:.|.|....||||::      :|.::|.|
 Frog   128 AVEKVEIIADKVSGKKRGFGFVYFTNHDSADKAAVVKFHSINGHRVEVKKAVPKEELSQGSNRSF 192

  Fly   220 RFPIFSSVRAGYIPPQPATADSYNYNNPNYNPYLAQSVLPPS----AFTNGWAHYVIPMAPKPTP 280
            |.......|.|...|:       :||.           :|.|    ||..|:..|         .
 Frog   193 RGGRGGRGRGGGGAPR-------DYNG-----------IPGSGGKAAFGGGYGGY---------G 230

  Fly   281 GQNMAASLPSQQLAEHSLNGHGPDMWSSYPKTGIYSAQEWTSSKVAEWGPKAGHKHAQTSTNDRA 345
            |.|...........|.|..|:|.:.:.||            |...:.:||               
 Frog   231 GGNQGYGSYGGGYGEQSDYGNGYNSFGSY------------SQHQSSYGP--------------- 268

  Fly   346 KIDLKELQAATFNNKLDFGA-RGDADRMSGAGLGLGLTGG 384
               :|...:.::|.....|. ||......|.|.|:|.:.|
 Frog   269 ---MKGAGSGSWNRPNTSGPYRGGYSGGGGGGYGVGSSYG 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 33..110 CDD:302621 34/76 (45%)
RRM2_hnRNPA_like 137..209 CDD:240774 29/71 (41%)
hnrnpa0NP_988923.1 RRM1_hnRNPA0 10..88 CDD:240772 34/76 (45%)
RRM2_hnRNPA0 104..183 CDD:241023 31/78 (40%)
HnRNPA1 255..>275 CDD:314495 6/49 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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