DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp4 and bol

DIOPT Version :10

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001261614.1 Gene:bol / 39049 FlyBaseID:FBgn0011206 Length:233 Species:Drosophila melanogaster


Alignment Length:241 Identity:58/241 - (24%)
Similarity:98/241 - (40%) Gaps:49/241 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 ALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDR 171
            |.|......|||:.:.:.:  .:.|.:...|||:||:.....|..:...||.:|.|.|.|:::||
  Fly     6 AAPPPSATPGGGLETPLAA--PKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR 68

  Fly   172 ETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQKADRRFRFPIFSSVR---AGY-- 231
             .|..:.:||:.|.....|::..|..:..:|:   :.|.:...|.::...|:.|.|.   |.|  
  Fly    69 -AGVSKGYGFVTFETEQEAQRLQADGECVVLR---DRKLNIAPAIKKQPNPLQSIVATNGAVYYT 129

  Fly   232 -IPPQPATADSYNYNNPN-------YNPYL------AQSVLPPSA--FTNGWAHYVIPMAPKPTP 280
             .||.|.:      |.|.       |.|..      ..::.||||  :...:.:|.:||      
  Fly   130 TTPPAPIS------NIPMDQFAAAVYPPVTDFTAAGVPAIYPPSAMQYQPFYQYYSVPM------ 182

  Fly   281 GQNMAASLPSQQLAEHS-------LNGHGPDMWSSYPKTGIYSAQE 319
              |:....|......||       .|.|.|.. .|:|::..:|.::
  Fly   183 --NVPTIWPQNYQENHSPLLHSPTSNPHSPHS-QSHPQSPCWSIED 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069
RRM2_hnRNPA_like 137..209 CDD:409766 21/71 (30%)
bolNP_001261614.1 RRM_DAZL_BOULE 31..111 CDD:409846 23/83 (28%)
PABP-1234 <45..219 CDD:130689 46/192 (24%)
Blue background indicates that the domain is not in the aligned region.

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