DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp4 and Hnrnpa3

DIOPT Version :10

Sequence 1:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_937765.1 Gene:Hnrnpa3 / 362152 RGDID:727807 Length:379 Species:Rattus norvegicus


Alignment Length:197 Identity:74/197 - (37%)
Similarity:119/197 - (60%) Gaps:18/197 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 EEGY-----EHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPK 84
            |||:     |.|||:||||||.:||.::||..|.::|.:.|.||:|||.:..|||||||||...:
  Rat    23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87

  Fly    85 SVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDE 149
            .|:....||||.:|.::||.|.|:.|:|..:.|             ..:..|:||:||:||..:|
  Rat    88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG-------------AHLTVKKIFVGGIKEDTEE 139

  Fly   150 NIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQK 214
            ..:|:||.::|.:.:::::.||::|::|.|.|:.|.|..:.:|.:..:.|.|.....|||::..|
  Rat   140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204

  Fly   215 AD 216
            .:
  Rat   205 QE 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069 35/70 (50%)
RRM2_hnRNPA_like 137..209 CDD:409766 23/71 (32%)
Hnrnpa3NP_937765.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34 4/10 (40%)
RRM1_hnRNPA_like 36..113 CDD:409992 38/76 (50%)
RRM2_hnRNPA3 126..205 CDD:409996 26/78 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..225 1/3 (33%)
HnRNPA1 332..>348 CDD:463312
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 335..379
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.