Protein Alignment Rbp4 and Msi2

DIOPT Version :9

• Sequence 1: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Sequence 2: XP_038943587.1
• Gene: Msi2 / 360596
• RGDID: 1560397
• Length: 354
• Species: Rattus norvegicus
• Alignment Length: 346
• Identity: 102/346 - (29%)
• Similarity: 150/346 - (43%)
• Gaps: 73/346 - (21%)

  Fly    33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTI 97
            |:||||||.||:.::||.:||:||.:.:.:|:|||.:..||||||||:.||.||:.|.....|.:
  Rat    22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 86

  Fly    98 DNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPV 162
            |:|.::.|.|.||:...:               ....:|:||:|||........|::||.|||.|
  Rat    87 DSKTIDPKVAFPRRAQPK---------------MVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 136

  Fly   163 ASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQKADRRFRFPIFSSV 227
            ....|:.|:.|.|.|.|||:.|.:....||......|.|...:||.|::..|   ...||..:..
  Rat   137 EDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK---EVMFPPGTRG 198

  Fly   228 RAGYIP---------------PQ---------PATADSYNYNNPNYNPYLAQSVLPPSAF----- 263
            ||..:|               |.         |..|.||.|..|...|||..| .|.:|:
  Rat   199 RARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPALLPYLNAS-FPAAAYGPVAA 262

  Fly   264 ----------TNGWA---HYVIPMAPKPTPGQNMAASLPSQQLAEHSLNGHGP--DMWSSYPKTG 313
                      .|.::   ::..|.:|        |.|.|::.......|..||  |::.  |.:.
  Rat   263 AAVAAARGSVLNSYSAQPNFGAPTSP--------AGSNPARPGGFPGANSPGPVADLYG--PASQ 317

  Fly   314 IYSAQEWTSSKVAEWGPKAGH 334
            ......:.|:...:.|...||
  Rat   318 DSGVGNYISAASPQPGSGFGH 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp4	NP_476935.1	RRM_SF	33..110	CDD:302621	37/76 (49%)
		RRM2_hnRNPA_like	137..209	CDD:240774	27/71 (38%)
Msi2	XP_038943587.1	RRM1_MSI2	17..109	CDD:410153	39/101 (39%)
		PABP-1234	<35..351	CDD:130689	93/333 (28%)
		RRM2_MSI	111..184	CDD:240769	27/72 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910